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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58458326_58458920_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58458326 - 58458920
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AATTCTTCCACT
Flanking Amino Acid:
ANVIYKRDVGKVLMKLRKPR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.1
35.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
31.7
-2.1
3.4
39
46.2
Minor BPS
54.5
0.22
2
75.85
40.8

Associated Gene:

Gene:
TBPL1
Ensembl Gene ID:
ENSAPLG00000007996
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008314
58451527 - 58459107
7581