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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58528754_58565757_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58528754 - 58565757
Intron Length:
37004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
GTTGTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACTTTTTAAAA
Flanking Amino Acid:
AFIHLYASALGFRGQSFPPQ
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
60.5
0.33
1.3
63.52
36.6

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029244
58528685 - 58764342
235658