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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58541429_58565757_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58541429 - 58565757
Intron Length:
24329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
ACTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTGTTTCCACT
Flanking Amino Acid:
AFIHLYASALGLYQQI*
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
48.8
-0
2
74.97
42.5

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000038257
58541106 - 58764342
223237