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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58605494_58607677_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58605494 - 58607677
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCACTCTGAACT
Flanking Amino Acid:
IENIYSATKIGKESCFERIM
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
83.3
0.75
0.8
74.3
40.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
62.8
0.48
1.5
75.08
41.2

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038257
58541106 - 58764342
223237
ENSAPLT00000029244
58528685 - 58764342
235658
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000024811
58602745 - 58764342
161598
ENSAPLT00000039277
58602745 - 58764342
161598
ENSAPLT00000038304
58602745 - 58764342
161598