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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58609744_58611233_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58609744 - 58611233
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACATAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LYNTYKNNIGGLLGPAKRDA
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.6
0.33
1.1
65.9
38.5
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038257
58541106 - 58764342
223237
ENSAPLT00000029244
58528685 - 58764342
235658
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000024811
58602745 - 58764342
161598
ENSAPLT00000039277
58602745 - 58764342
161598
ENSAPLT00000008381
58605518 - 58764342
158825
ENSAPLT00000038304
58602745 - 58764342
161598