About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58637703_58638914_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58637703 - 58638914
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
ATTGTCTCCACT
Flanking Amino Acid:
PSPPPDSDLERVFVWDLDET
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.3
46
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.6
-0.2
2.8
64.4
47
Minor BPS
49.3
0.03
2.1
73.91
43.2

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038257
58541106 - 58764342
223237
ENSAPLT00000029244
58528685 - 58764342
235658
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000024811
58602745 - 58764342
161598
ENSAPLT00000039277
58602745 - 58764342
161598
ENSAPLT00000008381
58605518 - 58764342
158825
ENSAPLT00000038304
58602745 - 58764342
161598