Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58646729_58647071_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58646729 - 58647071

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGAATA

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAC

U12 Branch Point Sequence:

ACTCAGTTAACT

Flanking Amino Acid:

NSTNFSSSQQDYPSYTAFGQ

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

82.5

29.7

Major BPS

71.4

0.53

1.2

63.4

Major PPT

79.2

0.66

0.9

77.4

36.9

Minor 5ss

43.1

-0.8

2.9

57.4

46.9

Minor BPS

50.6

0.1

2.2

72.93

43.5

Associated Gene:

Gene:

EYA4

Ensembl Gene ID:

ENSAPLG00000008029

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038257

58541106 - 58764342

223237

ENSAPLT00000029244

58528685 - 58764342

235658

ENSAPLT00000046174

58541106 - 58764342

223237

ENSAPLT00000024811

58602745 - 58764342

161598

ENSAPLT00000039277

58602745 - 58764342

161598

ENSAPLT00000008381

58605518 - 58764342

158825

ENSAPLT00000038304

58602745 - 58764342

161598