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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58650571_58656957_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58650571 - 58656957
Intron Length:
6387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTTTTTAACT
Flanking Amino Acid:
DGSLDTFTGSVITSSGYSPR
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.6
40
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
30.4
-2.2
3.3
39.6
45.9
Minor BPS
77.7
0.95
1.1
85.51
34.9

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038257
58541106 - 58764342
223237
ENSAPLT00000029244
58528685 - 58764342
235658
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000024811
58602745 - 58764342
161598
ENSAPLT00000039277
58602745 - 58764342
161598
ENSAPLT00000008381
58605518 - 58764342
158825
ENSAPLT00000038304
58602745 - 58764342
161598