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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58657051_58662972_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58657051 - 58662972
Intron Length:
5922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTATGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTCTACTTATTC
Flanking Amino Acid:
STSVTTNGTGVSLLAVKTEP
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.8
0.69
0.8
77.8
29.9
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
53.8
0.1
1.8
63.93
41.8

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039277
58602745 - 58764342
161598