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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58663098_58685291_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58663098 - 58685291
Intron Length:
22194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CCTTATTTAACA
Flanking Amino Acid:
ESDVSEPPNTRSMEMQDLAS
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.1
35.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
77.1
0.61
0.9
72.6
36
Minor 5ss
35
-1.7
3.4
46.3
49
Minor BPS
66.9
0.53
1.5
71.69
40.8

Associated Gene:

Gene:
EYA4
Ensembl Gene ID:
ENSAPLG00000008029
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008381
58605518 - 58764342
158825
ENSAPLT00000038304
58602745 - 58764342
161598
ENSAPLT00000038257
58541106 - 58764342
223237
ENSAPLT00000029244
58528685 - 58764342
235658
ENSAPLT00000046174
58541106 - 58764342
223237
ENSAPLT00000024811
58602745 - 58764342
161598
ENSAPLT00000039277
58602745 - 58764342
161598