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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5887937_5888951_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5887937 - 5888951
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TTTCTTTGCAGT
Flanking Amino Acid:
LPVDHQLKDARIECSWQLKK
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
57
0.17
0.9
65
30.8
Major PPT
79.3
0.66
0.9
73.5
41.9
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
45
-0.3
2.1
69.31
42

Associated Gene:

Gene:
FANCL
Ensembl Gene ID:
ENSAPLG00000016346
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035527
5885476 - 5911018
25543
ENSAPLT00000017062
5885680 - 5914597
28918