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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5892541_5898003_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5892541 - 5898003
Intron Length:
5463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTCTTAAAAT
Flanking Amino Acid:
VRDLEILGWNKVAYVDTSLT
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
60.5
0.41
1.7
76.83
39.5

Associated Gene:

Gene:
FANCL
Ensembl Gene ID:
ENSAPLG00000016346
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035527
5885476 - 5911018
25543
ENSAPLT00000017062
5885680 - 5914597
28918