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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58991927_58992516_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58991927 - 58992516
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTATGTTAATA
Flanking Amino Acid:
VVGCSCVVVKDYGKESQAKD
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
80
0.75
1
78.6
31
Major PPT
81.6
0.71
0.9
75.5
38.4
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
53.7
0.11
2.1
68.23
38.5

Associated Gene:

Gene:
RPS12
Ensembl Gene ID:
ENSAPLG00000008543
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008886
58991826 - 58995388
3563