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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58992619_58993115_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58992619 - 58993115
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATATTTTACAC
Flanking Amino Acid:
CAEHQINLIKVDDNKKLGEW
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.3
0.55
1
69.6
40
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
47.2
-0.2
1.6
55.41
36.4

Associated Gene:

Gene:
RPS12
Ensembl Gene ID:
ENSAPLG00000008543
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008886
58991826 - 58995388
3563