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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_58993219_58994789_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58993219 - 58994789
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
GAAGTTATATTT
Flanking Amino Acid:
GIREAAKALDKRQAHLCVLA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
92.4
0.95
0.6
91.3
20.2
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
41
-0.6
1.7
50.84
37.4

Associated Gene:

Gene:
RPS12
Ensembl Gene ID:
ENSAPLG00000008543
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008886
58991826 - 58995388
3563