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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59001217_59002950_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59001217 - 59002950
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCCATCTTTACT
Flanking Amino Acid:
SILGPFFPAEAEKKGASNTI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
57.8
0.33
1.7
72.04
44.8

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375