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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59004697_59005477_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59004697 - 59005477
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
FVSGCVTILFGILDKVPNGP
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375