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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59005626_59007848_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59005626 - 59007848
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATC
Flanking Amino Acid:
AFPNNIATVMGSLEIFTGLG
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.69
0.7
78.4
30
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
57.4
0.21
1.7
68.66
38.1

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375