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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59009706_59011350_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59009706 - 59011350
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TCCTTCTCATAG
Flanking Amino Acid:
PTMSLFILKKFKLPAGYVGL
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
79.9
0.67
0.7
76
26.2
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
44.6
-0.5
1.9
47.96
45.5

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375