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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59012196_59013445_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59012196 - 59013445
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGAAC
5'SS Class:
major
3'SS Sequence:
GCCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTGTTTAAAT
Flanking Amino Acid:
LGPAPVLHIESQLWMFVLVL
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.5
39
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.5
0.71
0.8
75.7
32.7
Minor 5ss
30.8
-2.2
3.4
42.1
44.9
Minor BPS
63.6
0.5
1.9
81.87
39.5

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375