About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59013542_59014303_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59013542 - 59014303
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
ACTACTCTAACT
Flanking Amino Acid:
PVFPEILQCAYENGFEEGLS
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.9
31.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
85.9
0.81
0.8
80.9
31.1
Minor 5ss
37.9
-1.4
2.7
47.4
36.1
Minor BPS
59.6
0.38
1.7
75.82
40.7

Associated Gene:

Gene:
SLC18B1
Ensembl Gene ID:
ENSAPLG00000008600
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008962
59000606 - 59016980
16375