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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59018929_59020327_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59018929 - 59020327
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTCT
5'SS Class:
major
3'SS Sequence:
ACCTGCTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCTTCCTTACCT
Flanking Amino Acid:
VDWIPCADPERFAPSPVQKR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.6
37.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
60.1
0.23
0.9
57.7
37.9
Minor 5ss
45.5
-0.5
3.1
65.8
45.4
Minor BPS
72
0.77
1.7
83.33
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008745
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009094
59018094 - 59024302
6209