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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59022960_59023567_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59022960 - 59023567
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTTCTATATCC
Flanking Amino Acid:
HVVEGEYYLQVCTLLKCRST
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
71.8
0.49
0.8
65.1
29
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
62.4
0.37
1.9
79.19
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008745
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009094
59018094 - 59024302
6209