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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59029086_59029191_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59029086 - 59029191
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GACTTCTTAACG
Flanking Amino Acid:
EGAIKEAAQQGAHIIVTPED
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.3
34.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.6
0.55
0.9
68.5
37.3
Minor 5ss
31
-2.2
3.6
46.7
48.6
Minor BPS
69.5
0.47
1.4
64.92
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025541
59025421 - 59046972
21552
ENSAPLT00000021752
59025421 - 59038294
12874
ENSAPLT00000009124
59025421 - 59046972
21552
ENSAPLT00000027385
59028844 - 59046971
18128