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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59029323_59030830_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59029323 - 59030830
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTCCT
5'SS Class:
strong_major
3'SS Sequence:
TAAAACACATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
VNWIPCTDPTRFAPTPVLER
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
73.3
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
50.4
0.01
1
46.7
40.5
Minor 5ss
31.5
-2.1
2.9
42.7
44
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025541
59025421 - 59046972
21552
ENSAPLT00000021752
59025421 - 59038294
12874
ENSAPLT00000009124
59025421 - 59046972
21552
ENSAPLT00000027385
59028844 - 59046971
18128