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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59031024_59033038_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59031024 - 59033038
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCTGGTTTTATT
Flanking Amino Acid:
EGKLVARYHKYNLFMSEEQF
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
75.6
0.58
0.7
69.3
24.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
46.8
-0.1
2.1
66.64
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021752
59025421 - 59038294
12874
ENSAPLT00000009124
59025421 - 59046972
21552
ENSAPLT00000025541
59025421 - 59046972
21552