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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59031024_59043196_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59031024 - 59043196
Intron Length:
12173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATTTTTAGTT
Flanking Amino Acid:
EGKLVARYHKYNLFRQETQF
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.2
0.75
0.8
77.3
31.5
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
65.1
0.55
1.5
79.98
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027385
59028844 - 59046971
18128