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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59037534_59037787_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59037534 - 59037787
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTTCTCTAATT
Flanking Amino Acid:
DVQLAPGEFEVLNDGRLISK
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
60.6
44.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.2
0.66
0.9
79.6
32.7
Minor 5ss
28.7
-2.4
3.5
38.3
46.7
Minor BPS
70.5
0.72
1.6
87
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021752
59025421 - 59038294
12874