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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59044852_59045024_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59044852 - 59045024
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATATCC
Flanking Amino Acid:
HGSVIKYHWQVCTLLKCKST
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
78.1
36.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
71.8
0.49
0.8
65.1
29
Minor 5ss
34.5
-1.8
3.3
50.2
46
Minor BPS
62.4
0.37
1.9
79.19
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027385
59028844 - 59046971
18128