Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59045196_59046851_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59045196 - 59046851

Intron Length:

1656

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGGGA

5'SS Class:

major

3'SS Sequence:

TCTTTTCATCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCTCTTTTCATC

Flanking Amino Acid:

DVQLAPGEFEVLPDGRLESK

Intron Amino Acid Position:

459

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

65.9

39.8

Major BPS

100

1.24

0.5

100

Major PPT

80.4

0.68

0.8

74.3

35.6

Minor 5ss

28.7

-2.4

3.5

38.6

46.4

Minor BPS

50.5

-0

1.7

62.33

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027385

59028844 - 59046971

18128

ENSAPLT00000025541

59025421 - 59046972

21552