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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59107941_59114586_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
59107941 - 59114586
Intron Length:
6646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTTCACAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
DPQLQTLLLTSAEIQRILHQ
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77
32.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
68.3
0.41
1
63.5
36.3
Minor 5ss
61.5
0.39
2.2
74.2
34.9
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032154
59107877 - 59124416
16540