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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59108849_59114586_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59108849 - 59114586
Intron Length:
5738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCCTCTTCACA
Flanking Amino Acid:
CKFFDNAFLEAAEIQRILHQ
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
68.3
0.41
1
63.5
36.3
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
60.7
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032440
59108785 - 59124416
15632