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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5910945_5911855_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5910945 - 5911855
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAAAAA
5'SS Class:
major
3'SS Sequence:
TCTCTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
RSATTRRIAIGNNVSVTIEV
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
70.4
35.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80
0.67
0.8
78.1
29
Minor 5ss
31.1
-2.2
3.2
39.8
45.8
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
FANCL
Ensembl Gene ID:
ENSAPLG00000016346
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017062
5885680 - 5914597
28918