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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59114657_59116115_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59114657 - 59116115
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CATTTGGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCTAATGAAACT
Flanking Amino Acid:
PQDTHELRQQLQQKQQYTNQ
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
72.5
0.51
1
69.5
41.3
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
42.8
-0.4
2.3
64.89
45.7

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872
ENSAPLT00000032440
59108785 - 59124416
15632
ENSAPLT00000032154
59107877 - 59124416
16540