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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59118052_59118772_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59118052 - 59118772
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
ACACCGAATGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
ARVRASSRVSGGAPEDNYKE
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
100
1.24
0.5
100
0
Major PPT
52.1
0.05
1
44.5
35.7
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032154
59107877 - 59124416
16540
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872
ENSAPLT00000032440
59108785 - 59124416
15632