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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59118826_59119582_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59118826 - 59119582
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGTTTTGACA
Flanking Amino Acid:
YKEGTLVSWDTQPQAQVQDE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
65.9
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.5
0.73
1
79.9
37.7
Minor 5ss
44.6
-0.6
2.8
54.7
43.3
Minor BPS
68.4
0.57
1.3
77.15
33.9

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032154
59107877 - 59124416
16540
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872
ENSAPLT00000032440
59108785 - 59124416
15632