About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59119674_59121081_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59119674 - 59121081
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGGTATGACA
Flanking Amino Acid:
ERESSIRQLEADIMDINEIF
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
45.2
-0.3
2.1
59.68
40.4

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872
ENSAPLT00000032440
59108785 - 59124416
15632
ENSAPLT00000032154
59107877 - 59124416
16540