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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59121155_59121994_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59121155 - 59121994
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
MMIHEQGDVIDSIEANVENA
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70
0.45
1
64.2
40.6
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872
ENSAPLT00000032440
59108785 - 59124416
15632
ENSAPLT00000032154
59107877 - 59124416
16540