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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59122078_59124323_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59122078 - 59124323
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TCTCTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCTCTATTT
Flanking Amino Acid:
EQLSRAANYQQRSRKKMCIL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.8
0.81
0.8
80
30.9
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
60.6
0.41
1.9
84.33
36.8

Associated Gene:

Gene:
STX7
Ensembl Gene ID:
ENSAPLG00000009054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032440
59108785 - 59124416
15632
ENSAPLT00000032154
59107877 - 59124416
16540
ENSAPLT00000031352
59106012 - 59124416
18405
ENSAPLT00000009446
59100337 - 59124416
24080
ENSAPLT00000035330
59102279 - 59125150
22872