About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5912607_5912695_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5912607 - 5912695
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TCGTACTGACTT
Flanking Amino Acid:
RTKLNNNMHLWDPEISLLQN
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.8
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
78.9
0.65
0.8
72.6
30.9
Minor 5ss
44.1
-0.6
2.9
58
40.8
Minor BPS
47.7
-0.1
1.9
65.37
45.4

Associated Gene:

Gene:
FANCL
Ensembl Gene ID:
ENSAPLG00000016346
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017062
5885680 - 5914597
28918