Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5912778_5913555_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5912778 - 5913555

Intron Length:

778

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTTGC

5'SS Class:

major

3'SS Sequence:

CGTGTGTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TCTACTGTAAAC

Flanking Amino Acid:

FPSRAVLEENDFTKDCGICY

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.3

73.2

39.3

Major BPS

0.45

0.9

67.6

25.3

Major PPT

65.2

0.34

1.1

67.2

Minor 5ss

41.9

-0.9

2.8

51.9

38.5

Minor BPS

48.9

-0.1

2.1

63.89

41.8

Associated Gene:

Gene:

FANCL

Ensembl Gene ID:

ENSAPLG00000016346

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017062

5885680 - 5914597

28918