Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5914091_5914561_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5914091 - 5914561

Intron Length:

471

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTATTTTCCAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTATTTTAAAA

Flanking Amino Acid:

IFGECPYCNKPLTLKSSMKK

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

28.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

71.9

0.49

70.9

38.8

Minor 5ss

31.6

-2.1

3.1

46.4

Minor BPS

63.7

0.43

1.4

71.38

34.1

Associated Gene:

Gene:

FANCL

Ensembl Gene ID:

ENSAPLG00000016346

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017062

5885680 - 5914597

28918