About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59146357_59157595_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59146357 - 59157595
Intron Length:
11239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTCAACA
Flanking Amino Acid:
GVEGGQPYLQDYFTDENRVL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.69
0.9
77.9
35.1
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
67
0.53
1.5
76.01
35

Associated Gene:

Gene:
MOXD1
Ensembl Gene ID:
ENSAPLG00000009110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009515
59146084 - 59199669
53586