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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59157743_59159201_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59157743 - 59159201
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
TCDTNDKSITESTVRVIWAY
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
67.2
39.4
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
38.8
-1.3
3.1
51.6
45.1
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
MOXD1
Ensembl Gene ID:
ENSAPLG00000009110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009515
59146084 - 59199669
53586