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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59159370_59159483_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59159370 - 59159483
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTCATTAAGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAAGA
Flanking Amino Acid:
LPYFDLTNKDVPIPDKDTTY
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
78.4
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
65.6
0.35
1.1
62.2
42.4
Minor 5ss
41.9
-0.9
2.8
51.8
38.6
Minor BPS
70.8
0.65
1.9
84.69
35.1

Associated Gene:

Gene:
MOXD1
Ensembl Gene ID:
ENSAPLG00000009110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009515
59146084 - 59199669
53586