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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59178992_59181232_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59178992 - 59181232
Intron Length:
2241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AGTTCCTTAGAT
Flanking Amino Acid:
VIFAWAIGGEGFTYPPHVGL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86
0.81
0.8
77.7
40.6
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
66.2
0.59
1.7
81.14
39.8

Associated Gene:

Gene:
MOXD1
Ensembl Gene ID:
ENSAPLG00000009110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009515
59146084 - 59199669
53586