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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5918461_5922494_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5918461 - 5922494
Intron Length:
4034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
GTGCCAAAACCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTTGCTTACCA
Flanking Amino Acid:
RNRTAEASKVIQQKQKKAEG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
51.3
0.03
1.1
42.2
41.3
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
60.9
0.34
2.1
75.93
41.5

Associated Gene:

Gene:
VRK2
Ensembl Gene ID:
ENSAPLG00000016420
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017140
5918294 - 5953187
34894