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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59193691_59197109_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59193691 - 59197109
Intron Length:
3419

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATTATTAATT
Flanking Amino Acid:
IGVKEIYRPVRTWPFIIKSP
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
71.1
0.74
1.5
85.74
34

Associated Gene:

Gene:
MOXD1
Ensembl Gene ID:
ENSAPLG00000009110
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009515
59146084 - 59199669
53586