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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59201_62039_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59201 - 62039
Intron Length:
2839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTGCCACAACC
Flanking Amino Acid:
IDFVQYLLEKGADVNATDNF
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.4
35.1
Major BPS
69.2
0.48
1
61
37.1
Major PPT
81.2
0.7
0.8
77
31.3
Minor 5ss
37.8
-1.4
3
40.6
45.1
Minor BPS
51.8
0.03
2
67.67
43.9

Associated Gene:

Gene:
ANKEF1
Ensembl Gene ID:
ENSAPLG00000008532
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008873
54173 - 66973
12801