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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5922720_5925165_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5922720 - 5925165
Intron Length:
2446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAAGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAGT
Flanking Amino Acid:
TAKTKVKNIAGLHQVKFTFK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.9
0.42
1
59.2
46
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
56.9
0.3
1.7
75.64
41.7

Associated Gene:

Gene:
VRK2
Ensembl Gene ID:
ENSAPLG00000016420
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017140
5918294 - 5953187
34894